Rajib Saha
Sessions chaired or co-chaired
Advances in Computational Methods and Numerical Analysis II
2017 Annual Meeting (ISBN: 978-0-8169-1102-8)
Applied Math for Biological and Biomedical Systems II
2017 Annual Meeting (ISBN: 978-0-8169-1102-8)
In silico Systems Biology I: Biotechnology Applications
2017 Annual Meeting (ISBN: 978-0-8169-1102-8)
In silico Systems Biology II: Health Applications
2017 Annual Meeting (ISBN: 978-0-8169-1102-8)
Modeling and Engineering Cellular Communities
2018 AIChE Annual Meeting (ISBN: 978-0-8169-1108-0)
Modeling and Engineering Cellular Communities
2018 AIChE Annual Meeting (ISBN: 978-0-8169-1108-0)
Poster Session: Bioengineering
2019 AIChE Annual Meeting (ISBN: 978-0-8169-1112-7)
Poster Session: Bioengineering
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
Systems Biology for Engineering Metabolism
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
Systems and Quantitative Biology of Microbes
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
Systems and Quantitative Biology: Integrative Omics Analysis
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
Systems and Quantitative Biology: Modeling Biological Processes
2022 Annual Meeting (ISBN: 978-0-8169-1118-9)
Systems and Quantitative Biology: Modeling Biological Processes
2022 Annual Meeting (ISBN: 978-0-8169-1118-9)
Authored
(674f) Microbiome-Virome Interactions in Bovine Rumen: The Role of Auxiliary Metabolic Genes in Relaxing Metabolic Bottlenecks
2017 Annual Meeting (ISBN: 978-0-8169-1102-8)
(362e) Computation-Driven Mechanistic Understanding of the Cellular Cost and Regulation of Melanin Production
2017 Annual Meeting (ISBN: 978-0-8169-1102-8)
(343h) K-Ath - Towards a Multi-Tissue Kinetic Model of Arabidopsis thaliana
2017 Annual Meeting (ISBN: 978-0-8169-1102-8)
(194u) Effect of Heat Stress on Rice Seed Development: Discovering Global Regulatory Players and Modeling of Rice Metabolism
2017 Annual Meeting (ISBN: 978-0-8169-1102-8)
(134b) Elucidating the Physiological Significance of Nitric Oxide Synthase (NOS) in Staphylococcus aureus through Metabolic Modeling
2017 Annual Meeting (ISBN: 978-0-8169-1102-8)
Computation-Driven Mechanistic Understanding of the Cellular Cost and Regulation of Defensive Pigment Production5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)
Optfill: A Novel Optimization-Based Tool to Automate the Gapfilling of Genome-Scale Metabolic Models5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)
Koptic: A Novel Approach for in silico Prediction of Enzyme Kinetics and Regulation5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)
Data-Driven Discovery of Novel Therapeutic Targets Against Community-Associated Methicillin-Resistant Staphylococcus Aureus5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)
Miren: An Optimization Tool for Data-Driven Discovery of Global Regulatory Phenomena Used to Elucidate the Heat Stress Response Mechanism in Rice Seed5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)
Towards a Metabolic and Expression Model of the Metabolically Versatile Bacterium Rhodopseudomonas Palustris5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)
Improving Succinic Acid Production in Actinobacillus Succinogenes through Genome-Scale Metabolic Models5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)
(643a) Transcriptional Regulators for Predictable and Precise Gene Expression in the Metabolically Versatile Rhodopseudomonas Palustris CGA009
2018 AIChE Annual Meeting (ISBN: 978-0-8169-1108-0)
(188bg) Development of Actinobacillus succinogenes 130Z As a Biotechnology Host for Succinic Acid Production
2018 AIChE Annual Meeting (ISBN: 978-0-8169-1108-0)
(568f) Towards a Metabolic and Expression Model of the Metabolically Versatile Bacterium Rhodopseudomonas Palustris
2018 AIChE Annual Meeting (ISBN: 978-0-8169-1108-0)
(711b) Elucidating Microbiome-Virome Interactions and Metabolic Transactions in Bovine Rumen through in silico genome-Scale Modeling
2018 AIChE Annual Meeting (ISBN: 978-0-8169-1108-0)
(696e) Data-Driven Discovery of Novel Therapeutic Targets through Metabolic Modeling of Staphylococcus Aureus
2018 AIChE Annual Meeting (ISBN: 978-0-8169-1108-0)
(658e) Koptic: A Novel Approach for in silico Prediction of Enzyme Kinetics and Regulation
2018 AIChE Annual Meeting (ISBN: 978-0-8169-1108-0)
(601e) Computation-Driven Mechanistic Understanding of the Cellular Cost and Regulation of Melanin Production
2018 AIChE Annual Meeting (ISBN: 978-0-8169-1108-0)
(315g) Optfill: A Novel Optimization-Based Tool to Automate the Gapfilling of Genome-Scale Metabolic Models
2018 AIChE Annual Meeting (ISBN: 978-0-8169-1108-0)
(549d) Metabolic Modeling and Pulse Amplitude Modulation Fluorometry Elucidate the Interplay between Photosynthesis and Carbon Fixation in a Purple Non-Sulfur Bacterium
2019 AIChE Annual Meeting (ISBN: 978-0-8169-1112-7)
(176v) Miren: An Optimization Tool for Transcriptomic Data-Driven Discovery of Global Regulatory Phenomena during Heat Stress in Rice Seed
2019 AIChE Annual Meeting (ISBN: 978-0-8169-1112-7)
(70g) Conversion of Lignin into Biodegradable Plastic By Rhodopseudomonas Palustris
2019 AIChE Annual Meeting (ISBN: 978-0-8169-1112-7)
(70c) Unlocking the Genetic Potential of Rhodopseudomonas Palustris CGA009 for Lignin Valorization
2019 AIChE Annual Meeting (ISBN: 978-0-8169-1112-7)
(347f) An in silico study of the Metabolic Transactions in the Rumen Microbiome and the Metabolic Shifts Inflicted By Virome Interactions
2019 AIChE Annual Meeting (ISBN: 978-0-8169-1112-7)
(86d) Development of a Non-Leaky Inducible System for Tunable Gene Expression in Actinobacillus Succinogenes 130 Z and Application for Increased Succinic Acid Production
2019 AIChE Annual Meeting (ISBN: 978-0-8169-1112-7)
(466f) EuGeneCD: A Computational Tool for Qualitative Genetic Circuit Design for Eukaryotic Organisms
2019 AIChE Annual Meeting (ISBN: 978-0-8169-1112-7)
(444a) Optfill: A Novel Optimization-Based Tool to Automate the Gapfilling of Genome-Scale Metabolic Models
2019 AIChE Annual Meeting (ISBN: 978-0-8169-1112-7)
(285f) Metabolic Modeling of Sphingolipid Metabolism to Elucidate the Flux Changes and Regulatory Events Induced By Biologically-Significant Perturbations
2019 AIChE Annual Meeting (ISBN: 978-0-8169-1112-7)
(728d) Engineering a Purple Non-Sulfur Bacterium to Expand Symbiotic Nitrogen Fixation
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(736f) Rhodopseudomonas Palustris Polyhydroxybutyrate Production from a Lignin Aromatic and Quantification Via Flow Cytometry
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(748c) Conversion of Lignin into Bioplastic By Rhodopseudomonas Palustris CGA009
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(157ay) Modifying the Operator for More Dynamic Tunable Gene Expression in Paraburkholderia Sacchari.
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(35c) Optimization-Based Analysis of Comparative Metabolomic Data Identifies Regulatory Mechanisms in Staphylococcus Aureus mutants (Faculty Candidate)
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(338e) Data-Driven Identification of Global Regulatory Relationship in Rice Seed Under Heat Stress
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(311b) Metabolic Modeling and Pulse Amplitude Modulation Fluorometry Elucidate the Interplay between Photosynthesis and Carbon Fixation in a Purple Non-Sulfur Bacterium
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(158ab) Predicting the Regulatory Role of ORM Proteins in the Sphingolipid Biosynthesis Pathway Using Ensemble Kinetic Modeling
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(118e) Computation-Driven Analysis of Model Polyextremotolerant Fungus Exophiala Dermatitidis: Defensive Pigment Metabolic Costs and Human Applications
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(613c) Predicting Enzyme Kinetics and Regulations from Dynamic Flux Balance Analysis through Kinetic Optimization Using Integer Conditions
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(620h) Introducing an Optimization- and Explicit Runge-Kutta- Based Approach to Perform Dynamic Flux Balance Analysis
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(338a) Optfill: A Tool for Infeasible Cycle-Free Gapfilling of Stoichiometric Metabolic Models
2020 Virtual AIChE Annual Meeting (ISBN: 978-0-8169-1114-1)
(465b) Phasins Employed By Rhodopseudomonas Palustris CGA009 for Bioplastic Production from Lignocellulosic Biomass
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(591b) Omics-Informed Metabolic Modeling Identifies Regulatory Mechanisms in Staphylococcus Aureus mutants
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(41b) Metabolic Modeling to Explore the Landscape of Pancreatic Ductal Adenocarcinoma Cells in Diverse Physiological Conditions
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(226h) Integrated Computational and Experimental Study to Dissect the Stress Response of Maize Root
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(489a) Creating Stable Mutants in the Plant Growth-Promoting Polyploid Rhodopseudomonas Palustris CGA009
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(284a) Introducing a Pair of Tools for the in silico Design and Dynamic Simulation of Eukaryotic Genetic Circuits
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(160ax) Investigating the Role of pBBR1’s Mobilization Protein in Plasmid Maintenance in Nonmodel Bacteria
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(278b) Heterologous Gene Expression Yields Higher Polyhydroxybutyrate Production in Paraburkholderia Sacchari
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(139e) Model-Guided Design Strategies for Bioplastic Overproduction in Rhodopseudomonas Palustris
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(344h) A Kinetic Model of Plant Sphingolipid Metabolism Identifies Key Enzymes and Regulatory Interactions in the Pathway
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(591g) Introducing New Approaches to Gapfilling and Dynamic Flux Balances Analysis for Genome-Scale Models
2021 Annual Meeting (ISBN: 978-0-8169-1116-5)
(450a) Synthetic Biology Tool Development Advances Predictable Gene Expression in the Metabolically Versatile Soil Bacterium Rhodopseudomonas Palustris
2022 Annual Meeting (ISBN: 978-0-8169-1118-9)
(499b) Metabolic Engineering of Paraburkholderia Sacchari for Improved Bioplastic Co-Polymer Production.
2022 Annual Meeting (ISBN: 978-0-8169-1118-9)
(62b) Characterizing the Interplay between Rubisco and Nitrogenase Enzymes of Rhodopseudomonas Palustris
2022 Annual Meeting (ISBN: 978-0-8169-1118-9)
(633f) Multi-Faceted Analysis Reveals the Metabolic Underpinnings of Overflow Metabolism in the Pathogenic Staphylococcus Aureus
2022 Annual Meeting (ISBN: 978-0-8169-1118-9)
(500f) Investigating the Role of pBBR1’s Mobilization Protein in Plasmid Maintenance in Non-Model Bacteria
2022 Annual Meeting (ISBN: 978-0-8169-1118-9)
(639d) An Integrated Experimental and Computational Study Reveals New Insights on Nutritional Stress Response and Persistence Mechanism of Chlamydia Trachomatis
2023 AIChE Annual Meeting (ISBN: 978-0-8169-1120-2)
(165g) A Maize Metabolic Atlas Revealed Bottlenecks in Temperature Stress Conditions
2023 AIChE Annual Meeting (ISBN: 978-0-8169-1120-2)
(373f) Omics-Informed Metabolic Modeling of Staphylococcus Aureus Reveals Underlying Principles of Overflow Metabolism
2023 AIChE Annual Meeting (ISBN: 978-0-8169-1120-2)
(639c) Dissecting Metabolic Landscape of Alveolar Macrophages
2023 AIChE Annual Meeting (ISBN: 978-0-8169-1120-2)
(58g) Using Dynamic Metabolic Modeling to Predict the Transcriptional Regulation of Cuticle Biosynthesis.
2023 AIChE Annual Meeting (ISBN: 978-0-8169-1120-2)
(27bk) Investigating the Relaxase Behavior and Replication Functionality of the Mobilization Protein Mobv in the Plasmid pBBR1
2023 AIChE Annual Meeting (ISBN: 978-0-8169-1120-2)
(241h) Modeling Sphingolipid Metabolism and Prediction of Orosomucoid (ORM) Proteins’ Regulatory Roles: 15 N Stable Isotope Labeling Studies
2023 AIChE Annual Meeting (ISBN: 978-0-8169-1120-2)
(253d) Lignin Degradation Mechanisms of Rhodopseudomonas Palustris CGA009
2023 AIChE Annual Meeting (ISBN: 978-0-8169-1120-2)
(533g) Addressing Temporal Variability in Metabolomics: A Dynamic Modeling Approach to Sphingolipid Biosynthesis in Arabidopsis thaliana
2024 AIChE Annual Meeting (ISBN: 978-0-8169-1122-6)
(374f) Transcriptomics Data Integrated Rice Kernel Metabolic Model Identified Histidine As a Marker of Chalkiness
2024 AIChE Annual Meeting (ISBN: 978-0-8169-1122-6)
(163c) Unraveling the Multifaceted Roles of Zinc Homeostasis in Host Defense: A Systems Biology Perspective
2024 AIChE Annual Meeting (ISBN: 978-0-8169-1122-6)
(252c) Dissecting Metabolic Landscape of Alveolar Macrophage
2024 AIChE Annual Meeting (ISBN: 978-0-8169-1122-6)
(163d) Thermodynamic Driving Force and Protein Cost Complement the Ccpa Regulation Governing the Onset of Staphylococcus Aureus Overflow Metabolism
2024 AIChE Annual Meeting (ISBN: 978-0-8169-1122-6)
(474b) Optimal Protein Allocation Controls the Inhibition of Glta and Acnb in Neisseria Gonorrhoeae
2024 AIChE Annual Meeting (ISBN: 978-0-8169-1122-6)
(368bj) Dissecting Lignin Degradation Mechanisms of Rhodopseudomonas Palustris
2024 AIChE Annual Meeting (ISBN: 978-0-8169-1122-6)
(642f) Investigating the Relaxase Behavior and Replication Functionality of the Mobilization Protein Mobv in the Plasmid pBBR1
2024 AIChE Annual Meeting (ISBN: 978-0-8169-1122-6)
(252a) Optrecon – an Optimization-Based Framework for Automated Genome Scale Model Reconstruction upon Resolving Thermodynamically Infeasible Cycles
2024 AIChE Annual Meeting (ISBN: 978-0-8169-1122-6)
Associated proceedings
2017 Annual Meeting
5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)
2018 AIChE Annual Meeting
2019 AIChE Annual Meeting
2020 Virtual AIChE Annual Meeting
2021 Annual Meeting
2022 Annual Meeting
2023 AIChE Annual Meeting
2024 AIChE Annual Meeting