Biological Databases

3D-PSSM Fold Library - web site containing mass databases relating to proteins by accessing to the Fold Library.

E.coli Cell Envelope Protein Data  - database including 452 signal sequences and proteins that build up an E.coli.

Eukaryotic Promoter Database - an annotated non-redundant collection of experimentally characterized eukaryotic POL II promoters.

GenBank - NIH genetic sequence database, an annotated collection of all publicly available DNA sequences

HomoloGene - a gene homology tool that compares nucleotide sequences between pairs of organisms in order to identify putative orthologs

MetabolicPathway Map - PDF file containing a map full of the metabolic pathway

ProSite - database containing patterns and profiles specific for more than a thousand protein families and domains

STR Database - database detailing the distribution of Human DNA-PCR polymorphisms

UniGene - collection of ESTs and full-length mRNA sequences organized into clusters, each representing a unique known or putative human gene annotated with mapping and expression information and cross-references to other sources

NCBI's PubChem Bioassay database  - bioactivity assay results supplied by  depositors

Human Mitochondrial Protein Database (HMPDb) - comprehensive data on mitochondrial and human nuclear encoded proteins involved in mitochondrial biogenesis and function

Enzymes and Metabolic Pathways database (EMP) - biochemical data that covers all aspects of enzymology and metabolism and represents the whole factual content of original journal publications

MetaCyc - a multiorganism database of metabolic pathways and enzymes containing 700 pathways from more than 600 different organisms garnered from the scientific experimental literature. It includes pathways involved in both primary and secondary metabolism as well as associated compounds, enzymes, and genes