Biological Properties Databases

Here you will find many links to a variety of resource websites related to biological data.  We take no responsibility for the accuracy of this information.

External Scientific Toolkit at the Rockefeller University -- data analysis resources

MassBank -- high-resolution mass spectral database

PharmGKB -- individualized medicine database for genetic variations and their responses to different drugs

Toxin, Toxin-Target Database -- information for 2,900 toxins ranging from pesticides to pollutants to drugs

PhenomicDB -- a genotype/phenotype database for seven different species

3D-PSSM Fold Library -- database of protein folding information

E.coli Cell Envelope Protein Data  -- database including 452 signal sequences and proteins that build up an E.coli.

Ontological Discovery Entertainment -- phenotype-centered gene information

Violin -- vaccine investigation and online infromation network

Vega -- vertebrate genome annotation (VEGA) a repository for high quality manual annotation of vertebrate finished genome sequences.

GenBank -- NIH genetic sequence database, an annotated collection of all publicly available DNA sequences

HomoloGene -- a gene homology tool that compares nucleotide sequences between pairs of organisms in order to identify putative orthologs

MetabolicPathway Map -- PDF file containing a map full of the metabolic pathway

ProSite -- database containing patterns and profiles specific for more than a thousand protein families and domains

STR Database -- database detailing the distribution of Human DNA-PCR polymorphisms

UniGene -- collection of ESTs and full-length mRNA sequences organized into clusters, each representing a unique known or putative human gene annotated with mapping and expression information and cross-references to other sources

NCBI's PubChem Bioassay database -- bioactivity assay results supplied by  depositors

NIST Human Mitochondrial Protein Database (HMPDb) -- comprehensive data on mitochondrial and human nuclear encoded proteins involved in mitochondrial biogenesis and function

BioCyc -- a collection of 371 Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism